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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
Assay category
369
DNA binding
Target of assay
694
histone modification
693
histone
480
transcription factor
369
narrow histone mark
323
broad histone mark
266
control
96
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
128
October, 2019
54
August, 2017
35
November, 2017
27
May, 2020
23
April, 2019
19
May, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
308
bigWig
305
bed narrowPeak
283
bam
124
tagAlign
104
bigBed narrowPeak
69
fastq
20
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
367
Homo sapiens
Biosample type
294
tissue
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
38
heart
29
connective tissue
blood vessel
18
vasculature
15
limb
14
epithelium
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
365
AMP
4
T1D
Genome assembly (visualization)
289
GRCh38
279
hg19
Lab
342
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
blood vessel
adipose tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
369 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
kidney
10
heart left ventricle
9
+ See 93 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
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