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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
3
single cell RNA-seq
Assay category
145
DNA binding
3
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
81
October, 2019
46
November, 2017
13
May, 2019
5
October, 2017
3
July, 2019
Available data
135
bam
112
bigWig
106
bed narrowPeak
73
tagAlign
33
bigBed narrowPeak
9
fastq
8
bed broadPeak
3
bigBed broadPeak
3
tsv
1
tagAlign bed3+
Organism
148
Homo sapiens
Biosample type
139
tissue
9
primary cell
Organ
168
liver
148
brain
126
pancreas
79
epithelium
68
connective tissue
48
vasculature
46
blood vessel
45
heart
36
adipose tissue
32
limb
27
kidney
19
musculature of body
19
nerve
15
artery
15
embryo
10
spleen
8
vein
7
blood
7
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
148
AMP
Genome assembly (visualization)
110
GRCh38
98
hg19
Lab
148
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
single cell RNA-seq
tissue
layer of hippocampus
11
angular gyrus
8
substantia nigra
8
brain
7
caudate nucleus
7
+ See 63 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
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