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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
Assay category
68
DNA binding
Target of assay
341
transcription factor
115
control
115
histone modification
114
histone
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
13
August, 2017
12
December, 2017
7
November, 2017
4
August, 2021
3
February, 2018
2
October, 2019
Available data
59
bigWig
58
bam
58
bed narrowPeak
40
tagAlign
27
fastq
14
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
68
Homo sapiens
Biosample type
44
tissue
13
in vitro differentiated cells
9
cell line
2
primary cell
Organ
117
brain
73
pancreas
60
liver
49
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
68
AMP
Genome assembly (visualization)
59
hg19
48
GRCh38
Lab
66
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
7
inconsistent control read length
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
tissue
liver
42
right lobe of liver
2
in vitro differentiated cells
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
cell line
HepG2
9
primary cell
hepatocyte
2
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