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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
Assay category
42
DNA binding
Target of assay
79
histone
79
histone modification
42
narrow histone mark
37
broad histone mark
27
control
7
transcription factor
6
RNA binding protein
3
nucleotide modification
Date released
11
September, 2018
9
October, 2019
8
August, 2017
December, 2017
4
November, 2019
2
August, 2021
2
June, 2019
2
May, 2021
2
November, 2017
1
March, 2020
1
May, 2019
Available data
42
bam
41
bed narrowPeak
41
bigWig
21
fastq
10
bigBed narrowPeak
3
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
35
primary cell
6
cell line
1
in vitro differentiated cells
Organ
117
brain
73
pancreas
53
liver
42
epithelium
33
connective tissue
26
vasculature
25
blood vessel
25
heart
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
embryo
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
40
AMP
2
T1D
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
42
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
primary cell
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
pancreatic acinar cell
4
pancreatic alpha cell
4
+ See 6 more…
cell line
EndoC_BH1
6
in vitro differentiated cells
pancreatic PP cell
1
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