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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
Assay category
398
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
248
November, 2017
49
November, 2018
40
December, 2017
27
May, 2020
17
August, 2017
15
August, 2021
2
October, 2019
Available data
385
bigWig
380
bed narrowPeak
376
bam
346
fastq
328
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
40
tagAlign
4
bed bed3+
3
tar
Organism
398
Homo sapiens
Biosample type
306
cell line
83
tissue
7
in vitro differentiated cells
2
primary cell
Organ
398
liver
120
brain
92
pancreas
73
connective tissue
58
epithelium
57
heart
52
blood
52
bodily fluid
vasculature
33
blood vessel
29
adipose tissue
25
kidney
15
limb
13
musculature of body
11
artery
11
embryo
8
nerve
8
spleen
6
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
398
AMP
Genome assembly (visualization)
381
hg19
327
GRCh38
Lab
385
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
398 results
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Clear Filters
ChIP-seq
cell line
HepG2
306
tissue
liver
79
right lobe of liver
4
in vitro differentiated cells
hepatocyte
7
primary cell
hepatocyte
2
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