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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
346
transcription factor
173
histone modification
172
histone
129
control
87
broad histone mark
85
narrow histone mark
82
recombinant protein
62
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
14
May, 2019
13
August, 2017
12
October, 2019
8
November, 2017
7
December, 2017
4
August, 2021
Available data
76
bigWig
75
bam
75
bed narrowPeak
40
tagAlign
38
bigBed narrowPeak
20
fastq
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
Organism
85
Homo sapiens
Biosample type
62
tissue
9
cell line
9
primary cell
5
in vitro differentiated cells
Organ
117
brain
73
pancreas
60
liver
49
epithelium
40
heart
33
connective tissue
26
vasculature
25
blood vessel
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
embryo
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
85
AMP
Genome assembly (visualization)
76
hg19
65
GRCh38
Lab
83
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
tissue
liver
42
aorta
4
ascending aorta
4
thoracic aorta
4
tibial artery
4
+ See 2 more…
cell line
HepG2
9
primary cell
endothelial cell of umbilical vein
6
hepatocyte
2
brain microvascular endothelial cell
1
in vitro differentiated cells
hepatocyte
5
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