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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
Assay category
214
DNA binding
Target of assay
346
transcription factor
173
histone modification
172
histone
129
control
87
broad histone mark
85
narrow histone mark
82
recombinant protein
62
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
65
November, 2017
50
May, 2020
25
May, 2019
24
August, 2017
20
December, 2017
19
October, 2019
9
August, 2021
2
February, 2021
Available data
197
bam
98
fastq
90
bigWig
75
bed narrowPeak
70
tagAlign
38
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
3
bed bed3+
Organism
214
Homo sapiens
Biosample type
124
tissue
71
cell line
13
primary cell
6
in vitro differentiated cells
Organ
168
liver
148
brain
126
pancreas
79
epithelium
68
connective tissue
60
heart
48
vasculature
46
blood vessel
36
adipose tissue
32
limb
27
kidney
19
musculature of body
19
nerve
15
artery
15
embryo
10
spleen
8
vein
7
blood
7
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
91
hg19
66
GRCh38
Lab
208
AMP-T2D consortium
6
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
tissue
liver
85
tibial artery
9
thoracic aorta
8
ascending aorta
7
aorta
6
+ See 2 more…
cell line
HepG2
69
smooth muscle cell of the coronary artery
2
primary cell
endothelial cell of umbilical vein
8
hepatocyte
3
brain microvascular endothelial cell
2
in vitro differentiated cells
hepatocyte
6
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