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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
Assay category
419
DNA binding
Target of assay
745
histone modification
744
histone
499
transcription factor
384
narrow histone mark
359
broad histone mark
308
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
68
August, 2017
50
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
19
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
9
January, 2019
8
February, 2018
7
November, 2018
4
November, 2019
3
March, 2020
2
December, 2018
2
October, 2017
Available data
348
bigWig
345
bed narrowPeak
337
bam
156
bigBed narrowPeak
127
tagAlign
105
fastq
25
bed broadPeak
11
bed bed3+
10
bigBed broadPeak
1
tagAlign bed3+
Organism
417
Homo sapiens
Biosample type
311
tissue
primary cell
58
in vitro differentiated cells
49
cell line
1
stem cell
Organ
114
brain
81
liver
42
pancreas
31
connective tissue
23
heart
18
blood vessel
18
vasculature
15
epithelium
15
limb
12
adipose tissue
11
blood
11
bodily fluid
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
lymph node
1
pituitary gland
Project
415
AMP
4
T1D
Genome assembly (visualization)
334
hg19
326
GRCh38
Lab
407
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
3
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
419 results
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Clear Filters
ChIP-seq
tissue
liver
44
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 99 more…
in vitro differentiated cells
adipocyte
18
embryonic stem cell
11
neural progenitor cell
7
hepatocyte
6
pancreatic endoderm
6
+ See 7 more…
cell line
HepG2
29
GM12878
11
EndoC_BH1
6
Panc1
3
stem cell
hESC
1
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