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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
Assay category
66
DNA binding
Target of assay
353
transcription factor
82
recombinant protein
75
control
64
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
36
November, 2017
21
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
Available data
65
bam
65
fastq
64
bed narrowPeak
64
bigWig
63
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
66
Homo sapiens
Biosample type
66
cell line
26
tissue
11
in vitro differentiated cells
7
primary cell
Organ
56
liver
10
blood
10
bodily fluid
Project
66
AMP
Genome assembly (visualization)
63
hg19
59
GRCh38
Lab
65
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
cell line
HepG2
56
GM12878
10
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