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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
33
November, 2017
21
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
64
bed narrowPeak
64
bigWig
63
bam
62
bigBed narrowPeak
62
fastq
5
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
64
Homo sapiens
Biosample type
64
cell line
23
tissue
10
primary cell
6
in vitro differentiated cells
Organ
53
liver
10
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
64
AMP
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
63
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
EndoC_BH1
1
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