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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
Assay category
67
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
36
November, 2017
21
November, 2018
6
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
66
bam
65
bed narrowPeak
65
bigWig
65
fastq
63
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
67
Homo sapiens
Biosample type
67
cell line
25
tissue
11
in vitro differentiated cells
8
primary cell
Organ
56
liver
10
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
67
AMP
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
66
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
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