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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
3
MeRIP-seq
Assay category
147
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
92
November, 2017
24
November, 2018
9
January, 2019
9
October, 2019
5
August, 2021
3
February, 2021
3
November, 2019
3
November, 2020
2
December, 2018
Available data
142
bam
127
fastq
78
bigWig
65
bed narrowPeak
63
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
4
tagAlign
1
tar
Organism
150
Homo sapiens
Biosample type
213
tissue
150
cell line
48
in vitro differentiated cells
45
primary cell
1
stem cell
Organ
116
liver
16
blood
16
bodily fluid
12
pancreas
6
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
150
AMP
Genome assembly (visualization)
77
hg19
60
GRCh38
Lab
142
AMP-T2D consortium
5
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
116
GM12878
16
EndoC_BH1
3
3
Panc1
6
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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