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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
Assay category
93
DNA binding
Target of assay
631
histone modification
630
histone
450
transcription factor
328
narrow histone mark
302
broad histone mark
270
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
36
November, 2017
24
November, 2018
11
October, 2018
6
January, 2019
4
April, 2019
4
May, 2019
2
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
92
bam
90
bigWig
89
bed narrowPeak
86
bigBed narrowPeak
83
fastq
5
bed broadPeak
5
bigBed broadPeak
2
bed bed3+
1
tar
Organism
93
Homo sapiens
Biosample type
67
cell line
26
tissue
11
in vitro differentiated cells
10
primary cell
Organ
58
liver
10
blood
10
bodily fluid
9
pancreas
5
adipose tissue
5
connective tissue
5
heart
3
blood vessel
3
spleen
3
vasculature
1
artery
1
epithelium
1
kidney
Project
93
AMP
Genome assembly (visualization)
89
hg19
85
GRCh38
Lab
92
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
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