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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
952
histone modification
951
histone
485
narrow histone mark
465
broad histone mark
460
transcription factor
343
control
100
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
12
November, 2017
10
November, 2018
6
January, 2019
3
December, 2017
2
August, 2017
2
December, 2018
Available data
41
bam
41
bed narrowPeak
41
bigWig
41
fastq
39
bigBed narrowPeak
6
bed broadPeak
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
27
cell line
5
tissue
3
in vitro differentiated cells
Organ
20
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
35
AMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
17
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
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