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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
Target of assay
341
transcription factor
290
histone modification
289
histone
177
narrow histone mark
139
control
112
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
52
November, 2017
19
August, 2017
15
May, 2019
10
December, 2017
10
October, 2017
6
October, 2019
2
August, 2021
Available data
92
bam
92
bed narrowPeak
92
bigWig
81
bigBed narrowPeak
63
tagAlign
33
fastq
13
bed broadPeak
9
bigBed broadPeak
1
bed bed3+
Organism
114
Homo sapiens
Biosample type
95
tissue
11
cell line
7
in vitro differentiated cells
1
primary cell
Organ
78
pancreas
70
brain
57
heart
45
blood vessel
45
vasculature
44
connective tissue
44
epithelium
44
liver
34
limb
20
adipose tissue
20
musculature of body
16
nerve
15
kidney
14
artery
9
vein
7
spleen
4
embryo
Project
114
AMP
Genome assembly (visualization)
91
GRCh38
57
hg19
Lab
113
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
tissue
liver
22
brain
13
layer of hippocampus
12
caudate nucleus
8
substantia nigra
8
+ See 5 more…
cell line
HepG2
11
in vitro differentiated cells
hepatocyte
7
primary cell
hepatocyte
1
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