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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
Assay category
99
DNA binding
Target of assay
839
histone modification
838
histone
449
transcription factor
427
narrow histone mark
411
broad histone mark
293
control
94
RNA binding protein
82
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
39
November, 2017
24
November, 2018
11
October, 2018
6
January, 2019
4
April, 2019
4
August, 2017
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
98
bam
96
bigWig
95
bed narrowPeak
93
bigBed narrowPeak
88
fastq
10
bed broadPeak
10
bigBed broadPeak
2
bed bed3+
1
tar
Organism
99
Homo sapiens
Biosample type
66
cell line
26
tissue
in vitro differentiated cells
7
primary cell
Organ
58
liver
10
blood
10
bodily fluid
8
pancreas
5
adipose tissue
5
connective tissue
5
heart
5
vasculature
4
blood vessel
3
brain
3
epithelium
3
spleen
1
artery
1
eye
1
kidney
Project
99
AMP
Genome assembly (visualization)
95
hg19
90
GRCh38
Lab
98
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
cell line
HepG2
56
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
+ See 9 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 1 more…
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