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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
719
histone modification
718
histone
474
transcription factor
373
narrow histone mark
344
broad histone mark
308
control
93
RNA binding protein
88
recombinant protein
22
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
31
November, 2017
23
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
92
bam
90
bigWig
89
bed narrowPeak
83
fastq
82
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
2
bed bed3+
1
tar
Organism
98
Homo sapiens
Biosample type
61
cell line
26
tissue
11
in vitro differentiated cells
primary cell
Organ
54
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
spleen
3
vasculature
1
artery
1
kidney
Project
98
AMP
Genome assembly (visualization)
89
hg19
86
GRCh38
Lab
92
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
cell line
HepG2
50
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
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