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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
Assay category
82
DNA binding
Target of assay
397
transcription factor
252
histone
252
histone modification
141
control
128
narrow histone mark
123
broad histone mark
89
recombinant protein
80
RNA binding protein
34
chromatin remodeller
2
other context
2
other post-translational modification
Date released
39
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
4
June, 2019
2
December, 2017
2
December, 2018
1
May, 2019
1
November, 2019
Available data
82
bam
80
bed narrowPeak
80
bigWig
76
fastq
75
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
1
tar
Organism
82
Homo sapiens
Biosample type
66
cell line
tissue
10
primary cell
6
in vitro differentiated cells
Organ
57
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
82
AMP
Genome assembly (visualization)
79
hg19
75
GRCh38
Lab
82
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
cell line
HepG2
55
GM12878
10
EndoC_BH1
1
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
adipocyte
4
hepatocyte
2
See all biosamples
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