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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
Assay category
78
DNA binding
Target of assay
388
histone
388
histone modification
369
transcription factor
198
broad histone mark
189
narrow histone mark
150
control
89
recombinant protein
76
RNA binding protein
24
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
39
November, 2017
19
November, 2018
6
August, 2017
5
May, 2021
4
June, 2019
2
December, 2017
1
August, 2021
1
May, 2019
1
November, 2019
Available data
72
bam
71
bed narrowPeak
71
bigWig
66
fastq
65
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
1
tar
Organism
78
Homo sapiens
Biosample type
57
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
58
liver
10
blood
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
78
AMP
Genome assembly (visualization)
70
hg19
65
GRCh38
Lab
72
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
cell line
HepG2
56
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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