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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
94
DNA binding
Target of assay
374
histone
374
histone modification
372
transcription factor
232
broad histone mark
142
narrow histone mark
89
RNA binding protein
81
recombinant protein
31
chromatin remodeller
5
other context
5
other post-translational modification
Date released
37
November, 2017
24
November, 2018
11
October, 2018
6
January, 2019
5
May, 2019
December, 2017
4
June, 2019
3
April, 2019
2
August, 2017
2
December, 2018
Available data
104
bam
102
bigWig
101
bed narrowPeak
94
bigBed narrowPeak
90
fastq
10
bed broadPeak
10
bigBed broadPeak
2
bed bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
63
cell line
21
tissue
10
primary cell
Organ
53
liver
10
blood
10
bodily fluid
6
connective tissue
6
heart
6
pancreas
5
adipose tissue
5
epithelium
5
vasculature
4
blood vessel
3
brain
3
spleen
2
kidney
1
artery
1
eye
Project
94
AMP
Genome assembly (visualization)
93
hg19
89
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
December, 2017
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
subcutaneous adipose tissue
2
+ See 5 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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