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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
101
DNA binding
Target of assay
751
histone modification
750
histone
485
transcription factor
388
narrow histone mark
361
broad histone mark
305
control
96
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
37
November, 2017
24
November, 2018
11
October, 2018
8
August, 2017
6
January, 2019
May, 2021
4
April, 2019
4
May, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
100
bam
98
bigWig
97
bed narrowPeak
91
bigBed narrowPeak
90
fastq
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
1
tar
Organism
101
Homo sapiens
Biosample type
66
cell line
26
tissue
5
primary cell
4
in vitro differentiated cells
Organ
60
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
3
spleen
1
artery
1
eye
Project
101
AMP
Genome assembly (visualization)
97
hg19
92
GRCh38
Lab
100
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
May, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
cell line
HepG2
56
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
spleen
3
islet of Langerhans
2
+ See 9 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac fibroblast
1
cardiac muscle cell
1
in vitro differentiated cells
adipocyte
4
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