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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
5
MeRIP-seq
Assay category
100
DNA binding
Target of assay
710
histone modification
709
histone
465
transcription factor
370
narrow histone mark
339
broad histone mark
276
control
95
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
36
November, 2017
24
November, 2018
6
January, 2019
6
October, 2018
5
May, 2021
5
May, 2024
5
November, 2020
4
April, 2019
4
December, 2017
4
May, 2019
2
August, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
92
bigWig
91
bed narrowPeak
89
bam
83
bigBed narrowPeak
80
fastq
5
bed broadPeak
5
bigBed broadPeak
2
bed bed3+
1
tar
Organism
105
Homo sapiens
Biosample type
70
cell line
28
tissue
primary cell
7
in vitro differentiated cells
Organ
60
liver
14
pancreas
10
blood
10
bodily fluid
10
heart
connective tissue
6
epithelium
5
adipose tissue
3
blood vessel
3
spleen
3
vasculature
1
artery
1
kidney
Project
105
AMP
Genome assembly (visualization)
87
GRCh38
86
hg19
Lab
89
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
5
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
3
tissue
body of pancreas
5
left cardiac atrium
5
islet of Langerhans
2
2
heart left ventricle
3
spleen
3
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
hepatocyte
2
See all biosamples
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