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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
3
MeRIP-seq
Assay category
83
DNA binding
Target of assay
397
transcription factor
344
histone
344
histone modification
174
broad histone mark
170
narrow histone mark
145
control
89
recombinant protein
81
RNA binding protein
32
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
39
November, 2017
21
November, 2018
6
January, 2019
5
May, 2021
3
June, 2019
3
November, 2020
2
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
77
bam
76
bed narrowPeak
76
bigWig
74
bigBed narrowPeak
72
fastq
10
bed broadPeak
10
bigBed broadPeak
1
tar
Organism
86
Homo sapiens
Biosample type
70
cell line
tissue
9
primary cell
7
in vitro differentiated cells
Organ
58
liver
11
epithelium
10
blood
10
bodily fluid
connective tissue
4
pancreas
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
Project
86
AMP
Genome assembly (visualization)
75
hg19
70
GRCh38
Lab
77
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
connective tissue
biosample_type!
tissue
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
56
GM12878
10
EndoC_BH1
1
3
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 3 more…
in vitro differentiated cells
embryonic stem cell
5
hepatocyte
2
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