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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
Assay category
189
DNA binding
Target of assay
710
histone modification
709
histone
465
transcription factor
370
narrow histone mark
339
broad histone mark
276
control
95
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
102
November, 2017
40
November, 2018
7
October, 2019
6
January, 2019
6
October, 2018
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
4
May, 2019
2
August, 2017
2
December, 2018
1
August, 2021
1
November, 2019
Available data
180
bigWig
179
bed narrowPeak
178
bam
164
bigBed narrowPeak
162
fastq
5
bed broadPeak
5
bigBed broadPeak
2
bed bed3+
1
tar
Organism
189
Homo sapiens
Biosample type
156
cell line
26
tissue
primary cell
7
in vitro differentiated cells
Organ
142
liver
10
blood
10
bodily fluid
10
heart
connective tissue
9
pancreas
8
kidney
5
adipose tissue
3
blood vessel
3
epithelium
3
spleen
3
vasculature
1
artery
Project
189
AMP
Genome assembly (visualization)
175
GRCh38
171
hg19
Lab
178
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent control run_type
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
189 results
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Clear Filters
ChIP-seq
cell line
HepG2
138
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
+ See 1 more…
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
spleen
3
islet of Langerhans
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
hepatocyte
2
See all biosamples
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