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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
31
November, 2017
19
November, 2018
4
December, 2017
1
August, 2021
Available data
59
bam
59
fastq
58
bed narrowPeak
58
bigWig
57
bigBed narrowPeak
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
55
Homo sapiens
Biosample type
51
cell line
2
in vitro differentiated cells
2
tissue
Organ
55
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
6
epithelium
6
heart
5
adipose tissue
3
blood vessel
3
kidney
3
spleen
3
vasculature
1
artery
1
eye
Project
55
AMP
Genome assembly (visualization)
52
hg19
49
GRCh38
Lab
54
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
cell line
HepG2
51
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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