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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
36
November, 2017
November, 2018
4
December, 2017
1
August, 2021
Available data
40
bam
40
fastq
39
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
41
Homo sapiens
Biosample type
37
cell line
2
in vitro differentiated cells
2
tissue
Organ
41
liver
10
connective tissue
9
pancreas
8
blood
8
bodily fluid
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
41
AMP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
40
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
cell line
HepG2
37
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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