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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
Assay category
168
DNA binding
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
92
November, 2017
23
May, 2020
19
November, 2018
17
December, 2017
11
August, 2017
6
August, 2021
Available data
160
bam
136
fastq
71
bigWig
58
bed narrowPeak
57
bigBed narrowPeak
28
tagAlign
5
bed broadPeak
5
bigBed broadPeak
1
bed bed3+
1
tar
Organism
168
Homo sapiens
Biosample type
116
cell line
48
tissue
3
in vitro differentiated cells
1
primary cell
Organ
168
liver
62
pancreas
45
connective tissue
38
epithelium
34
brain
29
adipose tissue
27
vasculature
26
heart
25
blood vessel
17
limb
16
blood
16
bodily fluid
15
kidney
11
nerve
11
spleen
10
artery
7
embryo
6
musculature of body
2
eye
2
vein
Project
168
AMP
Genome assembly (visualization)
71
hg19
54
GRCh38
Lab
163
AMP-T2D consortium
5
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
168 results
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Clear Filters
ChIP-seq
cell line
HepG2
116
tissue
liver
44
right lobe of liver
4
in vitro differentiated cells
hepatocyte
3
primary cell
hepatocyte
1
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