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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
339
transcription factor
109
control
106
histone modification
histone
82
recombinant protein
63
narrow histone mark
59
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
36
November, 2017
19
November, 2018
4
December, 2017
1
August, 2021
1
June, 2019
Available data
60
bam
59
bed narrowPeak
59
bigWig
59
fastq
58
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
1
tar
Organism
61
Homo sapiens
Biosample type
56
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
60
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
3
spleen
1
artery
1
eye
Project
61
AMP
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
60
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
cell line
HepG2
56
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
primary cell
retinal pigment epithelial cell
1
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