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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
Assay category
105
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
51
November, 2017
21
November, 2018
11
November, 2019
7
January, 2019
7
October, 2019
4
August, 2021
2
December, 2018
1
March, 2020
1
May, 2021
Available data
102
bigWig
101
bam
100
bed narrowPeak
83
bigBed narrowPeak
81
fastq
19
bed broadPeak
19
bigBed broadPeak
11
tagAlign
1
tar
Organism
105
Homo sapiens
Biosample type
618
tissue
247
primary cell
123
in vitro differentiated cells
105
cell line
2
stem cell
Organ
74
liver
20
pancreas
13
epithelium
11
blood
11
bodily fluid
Project
103
AMP
2
T1D
Genome assembly (visualization)
101
hg19
92
GRCh38
Lab
101
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent control run_type
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
cell line
HepG2
74
EndoC_BH1
13
GM12878
11
Panc1
7
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