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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
Assay category
247
DNA binding
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
0
other post-translational modification
Date released
118
May, 2021
40
August, 2017
32
September, 2018
23
June, 2019
21
October, 2019
6
November, 2017
4
May, 2019
3
August, 2021
Available data
240
bigWig
226
bed narrowPeak
213
bam
98
tagAlign
78
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
247
Homo sapiens
Biosample type
618
tissue
247
primary cell
123
in vitro differentiated cells
105
cell line
2
stem cell
Organ
71
epithelium
58
pancreas
19
vasculature
17
blood vessel
15
vein
12
kidney
9
connective tissue
8
musculature of body
6
brain
3
heart
3
liver
2
eye
Project
163
AMP
84
T1D
Genome assembly (visualization)
240
hg19
207
GRCh38
Lab
133
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
skeletal muscle myoblast
14
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