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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
Assay category
15
DNA binding
Target of assay
331
control
213
histone
213
histone modification
109
broad histone mark
104
narrow histone mark
66
transcription factor
14
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
0
other post-translational modification
Date released
6
November, 2017
5
May, 2021
1
April, 2019
1
August, 2017
1
August, 2021
1
November, 2018
Available data
9
bam
8
fastq
6
bed narrowPeak
6
bigWig
5
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
tar
Organism
15
Homo sapiens
Biosample type
8
cell line
5
in vitro differentiated cells
1
primary cell
1
tissue
Organ
8
liver
1
kidney
Project
15
AMP
Genome assembly (visualization)
190
hg19
GRCh38
Lab
9
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent control read length
1
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
cell line
HepG2
8
in vitro differentiated cells
embryonic stem cell
5
primary cell
skeletal muscle myoblast
1
tissue
kidney
1
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