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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
Assay category
123
DNA binding
Target of assay
397
transcription factor
252
histone
252
histone modification
141
control
128
narrow histone mark
123
broad histone mark
89
recombinant protein
80
RNA binding protein
34
chromatin remodeller
2
other context
2
other post-translational modification
Date released
81
November, 2017
23
November, 2018
7
October, 2019
6
January, 2019
3
August, 2017
2
December, 2018
1
December, 2017
Available data
123
bam
122
bed narrowPeak
122
bigWig
116
fastq
113
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
119
cell line
3
in vitro differentiated cells
tissue
1
primary cell
Organ
103
liver
10
blood
10
bodily fluid
7
kidney
2
connective tissue
1
epithelium
Project
123
AMP
Genome assembly (visualization)
120
GRCh38
119
hg19
Lab
123
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
123 results
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ChIP-seq
cell line
HepG2
102
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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