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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
Assay category
108
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
74
November, 2017
16
November, 2018
11
October, 2019
6
November, 2019
1
August, 2021
Available data
107
bam
106
bigWig
105
bed narrowPeak
91
bigBed narrowPeak
90
fastq
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
108
Homo sapiens
Biosample type
283
tissue
122
primary cell
108
cell line
56
in vitro differentiated cells
1
stem cell
Organ
91
liver
10
pancreas
7
kidney
6
epithelium
Project
108
AMP
Genome assembly (visualization)
104
GRCh38
103
hg19
Lab
107
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
cell line
HepG2
91
EndoC_BH1
6
Panc1
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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