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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
Assay category
117
DNA binding
Target of assay
981
histone modification
980
histone
501
transcription factor
498
narrow histone mark
481
broad histone mark
343
control
106
RNA binding protein
89
recombinant protein
28
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
77
November, 2017
19
November, 2018
7
October, 2019
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
117
bam
116
bed narrowPeak
116
bigWig
110
fastq
107
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
117
Homo sapiens
Biosample type
111
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
97
liver
10
blood
10
bodily fluid
7
kidney
2
connective tissue
1
epithelium
Project
117
AMP
Genome assembly (visualization)
116
GRCh38
113
hg19
Lab
117
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
14
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
cell line
HepG2
94
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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