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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
Assay category
93
DNA binding
Target of assay
928
histone modification
927
histone
474
transcription factor
470
narrow histone mark
456
broad histone mark
343
control
106
RNA binding protein
88
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
68
November, 2017
18
November, 2018
7
October, 2019
Available data
93
bam
93
bed narrowPeak
93
bigWig
86
bigBed narrowPeak
86
fastq
1
bed broadPeak
1
bigBed broadPeak
Organism
93
Homo sapiens
Biosample type
90
cell line
3
tissue
Organ
83
liver
7
kidney
3
spleen
Project
93
AMP
Genome assembly (visualization)
93
GRCh38
90
hg19
Lab
93
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
cell line
HepG2
83
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
spleen
3
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