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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
Assay category
347
DNA binding
Target of assay
347
transcription factor
89
recombinant protein
80
control
59
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
342
bigWig
338
bed narrowPeak
335
bam
323
fastq
314
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
347
Homo sapiens
Biosample type
347
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
297
liver
37
blood
37
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
347
AMP
Genome assembly (visualization)
338
hg19
295
GRCh38
Lab
336
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2019
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
cell line
HepG2
297
GM12878
37
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
iPSC derived cell line
1
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