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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
Assay category
51
DNA binding
Target of assay
83
control
33
transcription factor
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
8
recombinant protein
4
RNA binding protein
3
nucleotide modification
Date released
14
August, 2021
11
November, 2019
10
November, 2017
8
October, 2019
5
February, 2021
1
March, 2020
1
May, 2021
1
November, 2018
Available data
393
bigWig
387
bed narrowPeak
384
bam
353
fastq
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
16
tagAlign
3
tar
Organism
51
Homo sapiens
Biosample type
345
tissue
190
primary cell
147
in vitro differentiated cells
51
cell line
2
stem cell
Organ
25
liver
14
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
49
AMP
2
T1D
Genome assembly (visualization)
45
hg19
25
GRCh38
Lab
37
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
cell line
HepG2
25
EndoC_BH1
13
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
Panc1
1
iPSC derived cell line
1
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