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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
Assay category
161
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
59
August, 2017
37
May, 2021
35
December, 2017
16
February, 2018
14
August, 2021
Available data
116
bam
115
bigWig
110
bed narrowPeak
98
fastq
30
tagAlign
14
bed bed3+
14
bigBed narrowPeak
Organism
161
Homo sapiens
Biosample type
681
tissue
399
cell line
247
primary cell
161
in vitro differentiated cells
2
stem cell
Organ
59
connective tissue
18
epithelium
15
embryo
14
liver
2
pancreas
Project
161
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
129
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
in vitro differentiated cells
adipocyte
59
embryonic stem cell
34
hepatocyte
14
neural progenitor cell
14
pancreatic endoderm
13
definitive endodermal cell
6
primitive gut cell
6
Posterior foregut
4
cardiomyocytes
3
Hepatic endoderm
2
endocrine cell
2
pancreatic PP cell
2
posterior foregut
2
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