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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
Assay category
336
DNA binding
Target of assay
336
transcription factor
107
control
91
histone modification
90
histone
82
recombinant protein
56
RNA binding protein
55
narrow histone mark
35
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
31
December, 2017
11
August, 2021
4
August, 2017
Available data
331
bigWig
327
bed narrowPeak
325
fastq
324
bam
312
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
2
bed bed3+
Organism
336
Homo sapiens
Biosample type
297
cell line
39
tissue
in vitro differentiated cells
Organ
336
liver
51
blood
51
bodily fluid
18
connective tissue
18
pancreas
17
adipose tissue
12
heart
10
kidney
9
vasculature
8
blood vessel
6
epithelium
6
spleen
5
artery
3
brain
1
eye
Project
336
AMP
Genome assembly (visualization)
327
hg19
284
GRCh38
Lab
325
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
cell line
HepG2
297
tissue
liver
37
right lobe of liver
2
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