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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
Assay category
367
DNA binding
Target of assay
870
histone modification
869
histone
460
transcription factor
444
narrow histone mark
425
broad histone mark
306
control
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
210
November, 2017
43
November, 2018
29
December, 2017
28
December, 2018
21
August, 2017
10
August, 2021
8
January, 2019
7
October, 2019
5
February, 2021
4
October, 2018
2
April, 2019
Available data
364
bigWig
356
bam
343
bed narrowPeak
343
fastq
317
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
11
bed bed3+
5
tagAlign
2
tar
Organism
367
Homo sapiens
Biosample type
301
cell line
66
tissue
in vitro differentiated cells
Organ
283
liver
43
blood
43
bodily fluid
12
adipose tissue
12
connective tissue
9
pancreas
7
kidney
6
heart
6
spleen
4
artery
4
blood vessel
4
vasculature
Project
367
AMP
Genome assembly (visualization)
361
hg19
322
GRCh38
Lab
357
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
27
missing controlled_by
Audit category:
9
inconsistent control read length
5
inconsistent control run_type
biosample_type!
in vitro differentiated cells
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
cell line
HepG2
246
GM12878
43
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 2 more…
tissue
liver
36
white adipose tissue
12
spleen
6
islet of Langerhans
5
body of pancreas
4
+ See 2 more…
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