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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
Assay category
350
DNA binding
Target of assay
350
transcription factor
89
recombinant protein
79
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
7
October, 2019
5
February, 2021
1
November, 2019
Available data
349
bam
345
bigWig
341
bed narrowPeak
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
350
Homo sapiens
Biosample type
350
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
286
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
350
AMP
Genome assembly (visualization)
341
hg19
309
GRCh38
Lab
350
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
cell line
HepG2
286
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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