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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
Assay category
336
DNA binding
Target of assay
336
transcription factor
89
recombinant protein
83
control
63
RNA binding protein
38
histone
38
histone modification
28
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
331
bigWig
327
bed narrowPeak
324
bam
312
fastq
303
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
336
Homo sapiens
Biosample type
336
cell line
86
tissue
49
in vitro differentiated cells
10
primary cell
Organ
297
liver
26
blood
26
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
336
AMP
Genome assembly (visualization)
327
hg19
284
GRCh38
Lab
325
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
cell line
HepG2
297
GM12878
26
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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