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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
Assay category
360
DNA binding
Target of assay
360
transcription factor
89
recombinant protein
81
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
November, 2019
Available data
355
bigWig
351
bed narrowPeak
348
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
360
Homo sapiens
Biosample type
360
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
297
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
360
AMP
Genome assembly (visualization)
351
hg19
308
GRCh38
Lab
349
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
cell line
HepG2
297
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
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