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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
354
ChIP-seq
Assay category
354
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
5
February, 2021
1
November, 2019
Available data
349
bigWig
345
bed narrowPeak
342
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
354
Homo sapiens
Biosample type
354
cell line
88
tissue
49
in vitro differentiated cells
8
primary cell
Organ
297
liver
51
blood
51
bodily fluid
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
354
AMP
Genome assembly (visualization)
345
hg19
302
GRCh38
Lab
343
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
cell line
HepG2
297
GM12878
51
smooth muscle cell of the coronary artery
4
EndoC_BH1
1
iPSC derived cell line
1
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