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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
327
ChIP-seq
Assay category
327
DNA binding
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
33
December, 2017
4
August, 2017
Available data
327
fastq
326
bam
322
bigWig
318
bed narrowPeak
314
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
tar
2
bed bed3+
Organism
327
Homo sapiens
Biosample type
286
cell line
39
tissue
2
in vitro differentiated cells
Organ
327
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
12
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
327
AMP
Genome assembly (visualization)
318
hg19
286
GRCh38
Lab
327
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
327 results
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ChIP-seq
cell line
HepG2
286
tissue
liver
37
right lobe of liver
2
in vitro differentiated cells
hepatocyte
2
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