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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
Assay category
96
DNA binding
Target of assay
583
histone modification
582
histone
345
narrow histone mark
331
control
236
broad histone mark
96
transcription factor
15
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
45
August, 2017
16
May, 2021
11
August, 2021
9
December, 2017
8
November, 2017
5
February, 2021
1
November, 2018
1
November, 2019
Available data
482
bigWig
475
bam
455
bed narrowPeak
454
fastq
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
19
bed bed3+
9
tagAlign
3
tar
Organism
96
Homo sapiens
Biosample type
47
in vitro differentiated cells
26
cell line
23
tissue
Organ
34
connective tissue
24
liver
12
adipose tissue
9
pancreas
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
3
embryo
2
epithelium
Project
96
AMP
Genome assembly (visualization)
79
hg19
64
GRCh38
Lab
73
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
kidney
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 3 more…
cell line
HepG2
20
smooth muscle cell of the coronary artery
4
EndoC_BH1
1
iPSC derived cell line
1
tissue
white adipose tissue
12
islet of Langerhans
7
liver
4
See all biosamples
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