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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
Assay category
378
DNA binding
Target of assay
378
transcription factor
181
histone modification
180
histone
143
control
93
narrow histone mark
86
broad histone mark
82
recombinant protein
68
RNA binding protein
25
chromatin remodeller
2
other context
2
other post-translational modification
Date released
241
November, 2017
49
November, 2018
38
August, 2017
33
December, 2017
11
August, 2021
5
October, 2018
1
June, 2019
Available data
373
bigWig
366
bam
366
fastq
352
bed narrowPeak
320
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
12
bed bed3+
3
tar
Organism
378
Homo sapiens
Biosample type
297
cell line
56
tissue
24
in vitro differentiated cells
1
primary cell
Organ
338
liver
51
blood
51
bodily fluid
40
connective tissue
19
pancreas
17
adipose tissue
12
heart
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
378
AMP
Genome assembly (visualization)
369
hg19
326
GRCh38
Lab
367
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
29
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
378 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
tissue
liver
37
white adipose tissue
12
omental fat pad
3
right lobe of liver
2
subcutaneous adipose tissue
2
in vitro differentiated cells
adipocyte
22
hepatocyte
2
primary cell
cardiac fibroblast
1
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