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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
944
histone modification
943
histone
480
narrow histone mark
462
broad histone mark
260
control
148
transcription factor
RNA binding protein
6
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
39
August, 2017
38
December, 2017
11
May, 2021
7
November, 2018
4
October, 2018
3
December, 2018
2
April, 2019
Available data
97
bam
97
bigWig
91
fastq
75
bed narrowPeak
45
bigBed narrowPeak
17
bed bed3+
4
tagAlign
Organism
104
Homo sapiens
Biosample type
cell line
66
tissue
38
in vitro differentiated cells
Organ
37
liver
30
connective tissue
12
adipose tissue
10
pancreas
6
spleen
3
embryo
2
heart
1
epithelium
Project
104
AMP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
97
AMP-T2D consortium
7
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
RNA binding protein
biosample_type!
cell line
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
tissue
liver
36
white adipose tissue
12
spleen
6
islet of Langerhans
5
body of pancreas
4
+ See 2 more…
in vitro differentiated cells
adipocyte
18
embryonic stem cell
7
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 3 more…
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