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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
ChIP-seq
Assay category
405
DNA binding
Target of assay
405
transcription factor
193
histone modification
histone
168
control
98
broad histone mark
93
narrow histone mark
82
recombinant protein
80
RNA binding protein
31
chromatin remodeller
4
other context
4
other post-translational modification
Date released
197
November, 2017
64
November, 2018
45
August, 2017
42
December, 2017
28
December, 2018
15
October, 2018
14
January, 2019
Available data
496
bigWig
485
bam
469
bed narrowPeak
454
fastq
405
bigBed narrowPeak
bed broadPeak
49
bigBed broadPeak
19
bed bed3+
9
tagAlign
3
tar
Organism
405
Homo sapiens
Biosample type
293
cell line
79
tissue
33
in vitro differentiated cells
Organ
283
liver
51
blood
51
bodily fluid
39
connective tissue
17
adipose tissue
17
pancreas
6
spleen
3
embryo
2
epithelium
Project
405
AMP
Genome assembly (visualization)
396
hg19
376
GRCh38
Lab
405
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
35
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
405 results
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Clear Filters
ChIP-seq
cell line
HepG2
242
GM12878
51
tissue
liver
37
white adipose tissue
12
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 4 more…
in vitro differentiated cells
adipocyte
22
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
hepatocyte
2
+ See 1 more…
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