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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
399
DNA binding
57
DNA accessibility
Target of assay
325
transcription factor
80
recombinant protein
69
histone
69
histone modification
67
RNA binding protein
36
narrow histone mark
33
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
236
November, 2017
51
November, 2018
47
June, 2019
27
December, 2018
23
October, 2019
19
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1435
bam
1347
bigWig
931
fastq
785
bed narrowPeak
524
tsv
456
bigBed narrowPeak
153
zippedFastqFolder
149
tagAlign
96
bed broadPeak
96
bigBed broadPeak
58
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
456
Homo sapiens
Biosample type
tissue
331
cell line
108
primary cell
17
in vitro differentiated cells
Organ
285
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
456
AMP
Genome assembly (visualization)
445
hg19
420
GRCh38
Lab
456
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
456 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
269
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
13
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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